Issues

• compartment_score - Error in if (any(newwidths > 2 * widths)) { : missing value where TRUE/FALSE needed

  robinweide/GENOVA#373 · Filter by author asaki1986 opened on Dec 28, 2025

• help with stripes analysis

  robinweide/GENOVA#372 · Filter by author nibhelim opened on Dec 4, 2025
  2

• pyramid() error

  robinweide/GENOVA#371 · Filter by author knight-hzj opened on Dec 2, 2025
  1

• ARA contrast plot results consultation

  robinweide/GENOVA#365 · Filter by author YuZhang337 opened on Nov 25, 2024

• How to convert virtual4c result to bigwig track

  robinweide/GENOVA#364 · Filter by author luckysardar opened on Nov 5, 2024

• Error in insulation_score()

  robinweide/GENOVA#362 · Filter by author gxygogogo opened on Oct 7, 2024
  10

• Balancing for mcool files while loading contacts？

  robinweide/GENOVA#361 · Filter by author MaybeBio opened on Sep 11, 2024
  6

• Plotting issues (compartment_matrixplot, ATA plot)

  robinweide/GENOVA#360 · Filter by author tinyimp80 opened on Aug 2, 2024
  2

• Get average interaction submatrices from pre established contact file

  robinweide/GENOVA#359 · Filter by author Lucas446 opened on Jul 30, 2024
  1

• Pileup Plot Score

  robinweide/GENOVA#355 · Filter by author LucasMcNU opened on Jul 6, 2024
  1

• Example in Tutorial page 42 or PE-SCAn perspective plot could not be reproduced due to error "mfrow" has the wrong length

  robinweide/GENOVA#352 · Filter by author usernicai opened on Apr 10, 2024
  2

• Errors with chromosome_matrix() and load_contacts() function~

  robinweide/GENOVA#351 · Filter by author Miracle-Yao opened on Apr 9, 2024
  2

• calculating insulation score get inconsistant results

  robinweide/GENOVA#350 · Filter by author jiangshan529 opened on Mar 25, 2024
  6

• HiCExplorer final mcool file load in GENOVA

  robinweide/GENOVA#346 · Filter by author usernicai opened on Mar 11, 2024
  1

• ARA and pyramid plots issues

  robinweide/GENOVA#344 · Filter by author BERICP01 opened on Feb 20, 2024
  1

• Memory footprint in Rstudio

  robinweide/GENOVA#343 · Filter by author LucasMcNU opened on Jan 26, 2024
  6

• centromeres setting

  robinweide/GENOVA#342 · Filter by author tan5251 opened on Jan 18, 2024
  1

• how to create CS_discovery objsect from extrenal compartment results?

  robinweide/GENOVA#341 · Filter by author tan5251 opened on Jan 18, 2024
  3

• Disruption after load files

  robinweide/GENOVA#339 · Filter by author ccmeth opened on Oct 24, 2023
  8

• Question: Plot relative contact frequencies stratified by distance for a limited region?

  robinweide/GENOVA#338 · Filter by author kalavattam opened on Oct 19, 2023

• When I used loops obtained at a 50Kb resolution and a 50Kb matrices to create the APA plot, I obtained abnormal results.

  robinweide/GENOVA#337 · Filter by author Chuan0518 opened on Oct 17, 2023
  9

• hic file load error

  robinweide/GENOVA#336 · Filter by author Chuan0518 opened on Oct 8, 2023
  4

• Importing data from .hic and pyramid plot

  robinweide/GENOVA#335 · Filter by author ionas23 opened on Aug 1, 2023
  2

• APA results only contains a minimum part of original loops

  robinweide/GENOVA#331 · Filter by author Seuchezz opened on Jul 9, 2023
  3

• list of loops in hic_matrixplot

  robinweide/GENOVA#329 · Filter by author Guanchen-Li opened on Jun 5, 2023
  3