Max Planck Unit for the Science of Pathogens

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1. snakemake-ms-proteomics snakemake-ms-proteomics Public

   Pipeline for automatic processing and quality control of mass spectrometry data

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2. snakemake-crispr-guides snakemake-crispr-guides Public

   A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

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3. snakemake-ont-bacterial-variants snakemake-ont-bacterial-variants Public

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4. nf-core-crispriscreen nf-core-crispriscreen Public

   Process next generation sequencing data obtained from CRISPRi repression library screenings

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5. snakemake-bacterial-riboseq snakemake-bacterial-riboseq Public

   Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

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6. snakemake-ont-basecalling snakemake-ont-basecalling Public

   A Snakemake workflow for basecalling and demultiplexing of Oxford Nanopore data using Dorado.

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