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EBB2675/README.md

Dr. Esma Birsen Boydas


About

I am a quantum chemist, specializing in electronic structure theory with a focus on molecular reaction mechanisms, spectroscopy, and materials properties.

Currently working at Bundesanstalt für Materialforschung und -prüfung in Berlin as a Senior Data Scientist, focusing on data modeling and interoperability in materials science. Most of what I build is about lowering the barrier: tools that take the semantic heavy lifting off people's hands, so they can get to the science faster.

Active projects

mermantics A place where domain experts and data scientists design data models together. You just draw how your process or data fits together, and mermantics handles the semantics in the background. There's a general mode for process modelling, plus modes for specific communities like materials science, where your model gets checked against an ontology as you go. Try it in the browser

Schema Studio An explorer and editor for materials science data models. It reads the NOMAD schemas and BAM masterdata through LinkML and draws them as diagrams you can click through and edit. The browser version runs fully client side with Pyodide, so there's nothing to install. Try it in the browser

schematerial (early stage) Every platform describes the same sample or calculation a bit differently. schematerial is my attempt at a translation layer: it proposes crosswalks between data models, with AI agents doing the first pass and a human signing off.

GitCity Noir Skyline

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  1. schema-studio schema-studio Public

    A full-stack data model editor for materials science

    Python 9

  2. FAIRmat-NFDI/nomad-simulations FAIRmat-NFDI/nomad-simulations Public

    A NOMAD plugin containing base sections for simulations.

    Python 8 5

  3. BAMresearch/mermantics BAMresearch/mermantics Public

    a studio for process modelling

    TypeScript 1

  4. FAIRmat-NFDI/nomad-parser-plugins-simulation FAIRmat-NFDI/nomad-parser-plugins-simulation Public

    A repository for housing NOMAD's collection of simulation parser plugins.

    HTML 2 8

  5. FAIRmat-NFDI/nomad-bot-rag-docs-discord FAIRmat-NFDI/nomad-bot-rag-docs-discord Public

    A prototype chatbot built with retrieval-augmented generation (RAG) to assist researchers and developers working with the NOMAD platform.

    HTML 4 2

  6. schematerial schematerial Public

    a translation layer assistant between heterogeneous data models in order to infer, explain, validate, and maintain semantic crosswalks

    Python 1